Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

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Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

Database: DpseGB3 Primary Table: microsat Row Count: 785 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	CH379058	`varchar(255)`	values
`chromStart`	86324	`int(10) unsigned`	range
`chromEnd`	86375	`int(10) unsigned`	range
`name`	25xTC	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name
585	CH379058	86324	86375	25xTC
588	CH379058	447335	447367	16xCA
593	CH379058	1179184	1179219	17xCA
594	CH379058	1227740	1227771	15xAC
594	CH379058	1241041	1241071	15xAG
595	CH379058	1341871	1341901	15xCT
597	CH379058	1621562	1621592	15xCA
598	CH379058	1834740	1834772	16xCA
602	CH379058	2263738	2263768	15xTG
603	CH379058	2394290	2394321	15xGT

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Microsatellite (microsat) Track Description


	Description This track displays regions that are likely to be useful as microsatellite markers. These are sequences of at least 15 perfect di-nucleotide and tri-nucleotide repeats and tend to be highly polymorphic in the population. Methods The data shown in this track are a subset of the Simple Repeats track, selecting only those repeats of period 2 and 3, with 100% identity and no indels and with at least 15 copies of the repeat. The Simple Repeats track is created using the Tandem Repeats Finder. For more information about this program, see Benson (1999). Credits Tandem Repeats Finder was written by Gary Benson. References Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217