Schema for Tallymer - Repetitive Regions Identified by Tallymer

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Database: DpseGB3 Primary Table: tallymer Data last updated: 2017-08-06
Big Bed File: /gbdb/DpseGB3/bbi/DpseGB3.tallymer.bb
Item Count: 112,961
Format description: Browser Extensible Data

field	example	description
`chrom`	CH379058	Reference sequence chromosome or scaffold
`chromStart`	3528473	Start position in chromosome
`chromEnd`	3528513	End position in chromosome
`name`	tallymer_121279	Name of item.

Sample Rows

chrom	chromStart	chromEnd	name
CH379058	3528473	3528513	tallymer_121279
CH379058	3532282	3532325	tallymer_121287
CH379058	3535521	3535568	tallymer_121290
CH379058	3535586	3535675	tallymer_121291
CH379058	3535696	3535797	tallymer_121292
CH379058	3545660	3545725	tallymer_121302
CH379058	3559891	3559932	tallymer_121310
CH379058	3563658	3563703	tallymer_121316
CH379058	3572097	3572154	tallymer_121321
CH379058	3572225	3572290	tallymer_121322

Tallymer (tallymer) Track Description


	Description This evidence track shows the tallymer analysis of the D. pseudoobscura genome. References The Tallymer software is available as part of the GenomeTools package. Kurtz S., Narechania A., Stein J.C., Ware D. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics 2008, 9:517.

Description

References