Schema for CpG Islands - CpG Islands Identified by newcpgreport

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Schema for CpG Islands - CpG Islands Identified by newcpgreport

Database: DserGB1 Primary Table: cpg_islands Row Count: 58,520 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	MTTC01000001	`varchar(255)`	values
`chromStart`	204	`int(10) unsigned`	range
`chromEnd`	454	`int(10) unsigned`	range
`name`	cpg_13039	`varchar(255)`	values
`score`	80	`int(10) unsigned`	range
`strand`	+	`char(1)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand
585	MTTC01000001	204	454	cpg_13039	80	+
585	MTTC01000001	1592	1795	cpg_13040	89	+
585	MTTC01000001	1876	2180	cpg_13041	89	+
585	MTTC01000001	3527	3737	cpg_13042	94	+
585	MTTC01000001	4587	4820	cpg_13043	90	+
585	MTTC01000001	4823	6311	cpg_13044	88	+
585	MTTC01000001	6619	6929	cpg_13045	85	+
585	MTTC01000001	6935	7505	cpg_13046	84	+
585	MTTC01000001	7792	8292	cpg_13047	89	+
585	MTTC01000001	8311	8766	cpg_13048	72	+

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.