Schema for GC Percent - GC Percent in 5-Base Windows

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Schema for GC Percent - GC Percent in 5-Base Windows

Database: DserGB1 Primary Table: gc5Base Row Count: 39,366 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	MTTC01000001	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	5120	`int(10) unsigned`	range
`name`	MTTC01000001.0	`varchar(255)`	values
`span`	5	`int(10) unsigned`	range
`count`	1024	`int(10) unsigned`	range
`offset`	0	`int(10) unsigned`	range
`file`	/gbdb/DserGB1/wib/gc5Base.wib	`varchar(255)`	values
`lowerLimit`	0	`double`	range
`dataRange`	100	`double`	range
`validCount`	1024	`int(10) unsigned`	range
`sumData`	53960	`double`	range
`sumSquares`	3303200	`double`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	span	count	offset	file	lowerLimit	dataRange	validCount	sumData	sumSquares
585	MTTC01000001	0	5120	MTTC01000001.0	5	1024	0	/gbdb/DserGB1/wib/gc5Base.wib	0	100	1024	53960	3303200
585	MTTC01000001	5120	10240	MTTC01000001.1	5	1024	1024	/gbdb/DserGB1/wib/gc5Base.wib	0	100	1024	57940	3784400
585	MTTC01000001	10240	15360	MTTC01000001.2	5	1024	2048	/gbdb/DserGB1/wib/gc5Base.wib	0	100	1024	46940	2710800
585	MTTC01000001	15360	20480	MTTC01000001.3	5	1024	3072	/gbdb/DserGB1/wib/gc5Base.wib	0	100	1024	47880	2816000
585	MTTC01000001	20480	22020	MTTC01000001.4	5	308	4096	/gbdb/DserGB1/wib/gc5Base.wib	0	100	308	15140	905200
585	MTTC01000002	0	5120	MTTC01000002.5	5	1024	4404	/gbdb/DserGB1/wib/gc5Base.wib	0	100	1024	62840	4348000
585	MTTC01000002	5120	10240	MTTC01000002.6	5	1024	5428	/gbdb/DserGB1/wib/gc5Base.wib	0	100	1024	52920	3325600
585	MTTC01000002	10240	15360	MTTC01000002.7	5	1024	6452	/gbdb/DserGB1/wib/gc5Base.wib	0	100	1024	65200	4580800
585	MTTC01000002	15360	20480	MTTC01000002.8	5	1024	7476	/gbdb/DserGB1/wib/gc5Base.wib	0	100	1024	51540	3147600
585	MTTC01000002	20480	25600	MTTC01000002.9	5	1024	8500	/gbdb/DserGB1/wib/gc5Base.wib	0	100	1024	54020	3354000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GC Percent (gc5Base) Track Description


	Description The GC percent track shows the percentage of G (guanine) and C (cytosine) bases in 5-base windows. High GC content is typically associated with gene-rich areas. This track may be configured in a variety of ways to highlight different apsects of the displayed information. Click the "Graph configuration help" link for an explanation of the configuration options. Credits The data and presentation of this graph were prepared by Hiram Clawson.