Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

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Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

Database: DserGB1 Primary Table: microsat Row Count: 566 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	586	`smallint(5) unsigned`	range
`chrom`	MTTC01000012	`varchar(255)`	values
`chromStart`	232226	`int(10) unsigned`	range
`chromEnd`	232266	`int(10) unsigned`	range
`name`	20xTG	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name
586	MTTC01000012	232226	232266	20xTG
587	MTTC01000012	351470	351502	16xAT
590	MTTC01000012	738516	738550	17xAC
593	MTTC01000012	1111319	1111350	15xAG
597	MTTC01000012	1620062	1620092	15xTA
598	MTTC01000012	1801823	1801854	15xCA
599	MTTC01000012	1935437	1935473	18xGT
601	MTTC01000012	2193550	2193582	16xAT
610	MTTC01000012	3330139	3330169	15xCT
612	MTTC01000012	3556031	3556071	20xCA

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Microsatellite (microsat) Track Description


	Description This track displays regions that are likely to be useful as microsatellite markers. These are sequences of at least 15 perfect di-nucleotide and tri-nucleotide repeats and tend to be highly polymorphic in the population. Methods The data shown in this track are a subset of the Simple Repeats track, selecting only those repeats of period 2 and 3, with 100% identity and no indels and with at least 15 copies of the repeat. The Simple Repeats track is created using the Tandem Repeats Finder. For more information about this program, see Benson (1999). Credits Tandem Repeats Finder was written by Gary Benson. References Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217