Schema for tRNA Genes - Transfer RNA Genes Identified by tRNAscan-SE 2.0 |
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Database: DsimGB2 Primary Table: tRNAscanSE2Details Data last updated: 2019-07-06
Big Bed File: /gbdb/DsimGB2/bbi/DsimGB2.tRNAscanSE2Details.bb
Item Count: 292
Format description: tRNAs identified by tRNAscan-SE 2.0
| field | example | description |
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| chrom | CM002910 | Reference sequence chromosome or scaffold | | chromStart | 13548827 | Start position in chromosome | | chromEnd | 13548899 | End position in chromosome | | name | tRNA-Gln-CTG-CM002910-29 | Short Name of item | | score | 1000 | Score from 0-1000 | | strand | - | + or - | | thickStart | 13548827 | Start of where display should be thick (start codon) | | thickEnd | 13548899 | End of where display should be thick (stop codon) | | reserved | 0,0,0 | Used as itemRgb as of 2004-11-22 | | blockCount | 1 | Number of blocks | | blockSizes | 72 | Comma separated list of block sizes | | chromStarts | 0 | Start positions relative to chromStart | | tRNAType | Gln | tRNA type | | antiCodon | CTG | Anticodon | | trnaScore | 68.3 | Infernal Score | | hmmScore | 42.80 | Primary structure-only (HMM) score | | str2Score | 25.50 | Secondary structure-only score | | isotypeCM | Gln | Isotype covariance model | | isotypeScore | 106.7 | Isotype score | | notes | high confidence set | EukHighConfidenceFilter notes |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts | tRNAType | antiCodon | trnaScore | hmmScore | str2Score | isotypeCM | isotypeScore | notes |
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| CM002910 | 13548827 | 13548899 | tRNA-Gln-CTG-CM002910-29 | 1000 | - | 13548827 | 13548899 | 0,0,0 | 1 | 72 | 0 | Gln | CTG | 68.3 | 42.80 | 25.50 | Gln | 106.7 | high confidence set |
| CM002910 | 14034126 | 14034198 | tRNA-Pro-AGG-CM002910-20 | 1000 | + | 14034126 | 14034198 | 0,0,0 | 1 | 72 | 0 | Pro | AGG | 68.0 | 43.60 | 24.40 | Pro | 112.3 | high confidence set |
| CM002910 | 14056347 | 14056412 | tRNA-Gly-GCC-CM002910-21 | 1000 | + | 14056347 | 14056412 | 0,0,0 | 1 | 65 | 0 | Gly | GCC | 53.5 | 43.70 | 9.80 | Gly | 58.4 | trunc_start:6,secondary filtered |
| CM002910 | 14056597 | 14056668 | tRNA-Gly-GCC-CM002910-28 | 1000 | - | 14056597 | 14056668 | 0,0,0 | 1 | 71 | 0 | Gly | GCC | 80.1 | 59.20 | 20.90 | Gly | 108.6 | high confidence set |
| CM002910 | 14056933 | 14057004 | tRNA-Gly-GCC-CM002910-27 | 1000 | - | 14056933 | 14057004 | 0,0,0 | 1 | 71 | 0 | Gly | GCC | 80.1 | 59.20 | 20.90 | Gly | 108.6 | high confidence set |
| CM002910 | 14069033 | 14069104 | tRNA-Gly-GCC-CM002910-26 | 1000 | - | 14069033 | 14069104 | 0,0,0 | 1 | 71 | 0 | Gly | GCC | 80.1 | 59.20 | 20.90 | Gly | 108.6 | high confidence set |
| CM002910 | 14069337 | 14069408 | tRNA-Gly-GCC-CM002910-25 | 1000 | - | 14069337 | 14069408 | 0,0,0 | 1 | 71 | 0 | Gly | GCC | 80.1 | 59.20 | 20.90 | Gly | 108.6 | high confidence set |
| CM002910 | 14137725 | 14137797 | tRNA-Pro-AGG-CM002910-22 | 1000 | + | 14137725 | 14137797 | 0,0,0 | 1 | 72 | 0 | Pro | AGG | 68.0 | 43.60 | 24.40 | Pro | 112.3 | high confidence set |
| CM002910 | 14138286 | 14138358 | tRNA-Pro-AGG-CM002910-24 | 1000 | - | 14138286 | 14138358 | 0,0,0 | 1 | 72 | 0 | Pro | AGG | 68.0 | 43.60 | 24.40 | Pro | 112.3 | high confidence set |
| CM002910 | 14138564 | 14138636 | tRNA-Pro-AGG-CM002910-23 | 1000 | + | 14138564 | 14138636 | 0,0,0 | 1 | 72 | 0 | Pro | AGG | 68.0 | 43.60 | 24.40 | Pro | 112.3 | high confidence set |
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tRNA Genes (tRNAscanSE2Details) Track Description
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