Schema for GC Percent - GC Percent in 5-Base Windows

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Schema for GC Percent - GC Percent in 5-Base Windows

Database: DsimGB2 Primary Table: gc5Base Row Count: 31,083 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	CM002910	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	5120	`int(10) unsigned`	range
`name`	CM002910.0	`varchar(255)`	values
`span`	5	`int(10) unsigned`	range
`count`	1024	`int(10) unsigned`	range
`offset`	0	`int(10) unsigned`	range
`file`	/gbdb/DsimGB2/wib/gc5Base.wib	`varchar(255)`	values
`lowerLimit`	0	`double`	range
`dataRange`	100	`double`	range
`validCount`	1024	`int(10) unsigned`	range
`sumData`	30900	`double`	range
`sumSquares`	1477200	`double`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	span	count	offset	file	lowerLimit	dataRange	validCount	sumData	sumSquares
585	CM002910	0	5120	CM002910.0	5	1024	0	/gbdb/DsimGB2/wib/gc5Base.wib	0	100	1024	30900	1477200
585	CM002910	5120	10240	CM002910.1	5	1024	1024	/gbdb/DsimGB2/wib/gc5Base.wib	0	100	1024	39380	2068400
585	CM002910	10240	15360	CM002910.2	5	1024	2048	/gbdb/DsimGB2/wib/gc5Base.wib	0	100	1024	39700	2119600
585	CM002910	15360	20480	CM002910.3	5	1024	3072	/gbdb/DsimGB2/wib/gc5Base.wib	0	100	1024	40440	2165600
585	CM002910	20480	25600	CM002910.4	5	1024	4096	/gbdb/DsimGB2/wib/gc5Base.wib	0	100	1024	42166.7	2235250
585	CM002910	25600	30720	CM002910.5	5	1024	5120	/gbdb/DsimGB2/wib/gc5Base.wib	0	100	1024	45120	2544800
585	CM002910	30720	35840	CM002910.6	5	1024	6144	/gbdb/DsimGB2/wib/gc5Base.wib	0	100	1023	42810	2321700
585	CM002910	35840	40960	CM002910.7	5	1024	7168	/gbdb/DsimGB2/wib/gc5Base.wib	0	100	1024	37845	1962620
585	CM002910	40960	46080	CM002910.8	5	1024	8192	/gbdb/DsimGB2/wib/gc5Base.wib	0	100	1024	40060	2090000
585	CM002910	46080	51200	CM002910.9	5	1024	9216	/gbdb/DsimGB2/wib/gc5Base.wib	0	100	1024	37120	1883200

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GC Percent (gc5Base) Track Description


	Description The GC percent track shows the percentage of G (guanine) and C (cytosine) bases in 5-base windows. High GC content is typically associated with gene-rich areas. This track may be configured in a variety of ways to highlight different apsects of the displayed information. Click the "Graph configuration help" link for an explanation of the configuration options. Credits The data and presentation of this graph were prepared by Hiram Clawson.