Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

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Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

Database: DsimGB2 Primary Table: microsat Row Count: 92 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	606	`smallint(5) unsigned`	range
`chrom`	CM002910	`varchar(255)`	values
`chromStart`	2798282	`int(10) unsigned`	range
`chromEnd`	2798314	`int(10) unsigned`	range
`name`	16xAT	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name
606	CM002910	2798282	2798314	16xAT
614	CM002910	3882063	3882093	15xTC
615	CM002910	3958067	3958106	19xTG
620	CM002910	4608774	4608804	15xTA
630	CM002910	5911580	5911612	16xTG
632	CM002910	6235897	6235943	15xCTG
674	CM002910	11732746	11732777	15xAT
685	CM002910	13178953	13179018	32xGT
701	CM002910	15252568	15252606	19xAT
733	CM002910	19426356	19426404	24xAT

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Microsatellite (microsat) Track Description


	Description This track displays regions that are likely to be useful as microsatellite markers. These are sequences of at least 15 perfect di-nucleotide and tri-nucleotide repeats and tend to be highly polymorphic in the population. Methods The data shown in this track are a subset of the Simple Repeats track, selecting only those repeats of period 2 and 3, with 100% identity and no indels and with at least 15 copies of the repeat. The Simple Repeats track is created using the Tandem Repeats Finder. For more information about this program, see Benson (1999). Credits Tandem Repeats Finder was written by Gary Benson. References Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217