Schema for Tallymer - Repetitive Regions Identified by Tallymer

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Database: DsimGB2 Primary Table: tallymer Data last updated: 2017-08-06
Big Bed File: /gbdb/DsimGB2/bbi/DsimGB2.tallymer.bb
Item Count: 42,160
Format description: Browser Extensible Data

field	example	description
`chrom`	CM002910	Reference sequence chromosome or scaffold
`chromStart`	15894665	Start position in chromosome
`chromEnd`	15894705	End position in chromosome
`name`	tallymer_11044	Name of item.

Sample Rows

chrom	chromStart	chromEnd	name
CM002910	15894665	15894705	tallymer_11044
CM002910	15986921	15986977	tallymer_11061
CM002910	15996726	15996787	tallymer_11071
CM002910	15996989	15997048	tallymer_11073
CM002910	16010977	16011034	tallymer_11079
CM002910	16011212	16011262	tallymer_11080
CM002910	16041084	16041145	tallymer_11096
CM002910	16041155	16041218	tallymer_11097
CM002910	16049010	16049056	tallymer_11105
CM002910	16058651	16058704	tallymer_11112

Tallymer (tallymer) Track Description


	Description This evidence track shows the tallymer analysis of the D. simulans genome. References The Tallymer software is available as part of the GenomeTools package. Kurtz S., Narechania A., Stein J.C., Ware D. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics 2008, 9:517.

Description

References