Schema for RNA-Seq Coverage - D. suzukii RNA-Seq Coverage
  Database: DsuzGB1    Primary Table: coverage_males    Row Count: 1
fieldexampleSQL type info
fileName /gbdb/DsuzGB1/bbi/DsuzGB1_m...varchar(255) values

This table points to a file in BigWig format.

Sample Rows
 
fileName
/gbdb/DsuzGB1/bbi/DsuzGB1_males_thout.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

RNA-Seq Coverage (rnaseq_coverage) Track Description
 

Description

This track was created by mapping D. suzukii RNA-Seq reads (generated by the Spotted Wing Drosophila Genome Project) against the D. suzukii DsuzGB1 assembly using Bowtie2 and TopHat. The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the BioProject accession number PRJNA221549.

References

Chiu JC et al. Genome of Drosophila suzukii, the spotted wing drosophila. G3 (Bethesda). 2013 Dec 9;3(12):2257-71.

Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics. 2009 May 1;25(9):1105-11.