Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

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Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

Database: DsuzGB1 Primary Table: microsat Row Count: 39 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	AWUT01014064	`varchar(255)`	values
`chromStart`	14115	`int(10) unsigned`	range
`chromEnd`	14148	`int(10) unsigned`	range
`name`	16xAC	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name
585	AWUT01014064	14115	14148	16xAC
585	AWUT01016896	4622	5179	278xAC
585	AWUT01018411	740	937	65xAAC
585	AWUT01018411	1300	1998	232xCAA
585	AWUT01018723	1052	1093	20xCA
598	KI419149	1831692	1831772	40xAT
611	KI419149	3525054	3525087	16xAC
671	KI419149	11287891	11288056	82xGT
598	KI419150	1833996	1834028	16xAC
585	KI419236	89708	89739	15xGT

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Microsatellite (microsat) Track Description


	Description This track displays regions that are likely to be useful as microsatellite markers. These are sequences of at least 15 perfect di-nucleotide and tri-nucleotide repeats and tend to be highly polymorphic in the population. Methods The data shown in this track are a subset of the Simple Repeats track, selecting only those repeats of period 2 and 3, with 100% identity and no indels and with at least 15 copies of the repeat. The Simple Repeats track is created using the Tandem Repeats Finder. For more information about this program, see Benson (1999). Credits Tandem Repeats Finder was written by Gary Benson. References Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217