Schema for Tallymer - Repetitive Regions Identified by Tallymer

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

Database: DsuzGB1 Primary Table: tallymer Data last updated: 2017-08-17
Big Bed File: /gbdb/DsuzGB1/bbi/DsuzGB1.tallymer.bb
Item Count: 294,747
Format description: Browser Extensible Data

field	example	description
`chrom`	AWUT01012676	Reference sequence chromosome or scaffold
`chromStart`	63096	Start position in chromosome
`chromEnd`	63144	End position in chromosome
`name`	tallymer_98267	Name of item.

Sample Rows

chrom	chromStart	chromEnd	name
AWUT01012676	63096	63144	tallymer_98267
AWUT01012676	64222	64274	tallymer_98275
AWUT01012676	64480	64581	tallymer_98278
AWUT01012676	64582	64747	tallymer_98279
AWUT01012676	64748	64874	tallymer_98280
AWUT01012676	65009	65070	tallymer_98281
AWUT01012676	65093	65215	tallymer_98282
AWUT01012676	65263	65395	tallymer_98283
AWUT01012676	65459	65538	tallymer_98284
AWUT01012676	65539	65753	tallymer_98285

Tallymer (tallymer) Track Description


	Description This evidence track shows the tallymer analysis of the D. suzukii genome. References The Tallymer software is available as part of the GenomeTools package. Kurtz S., Narechania A., Stein J.C., Ware D. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics 2008, 9:517.

Description

References