Schema for GlimmerHMM - GlimmerHMM Gene Predictions
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Database: DtakGB2 Primary Table: glimmer Row Count: 26,666
field | example | SQL type | info |
bin | 585 | smallint(5) unsigned | range |
name | AFFI02000001.path1.gene1 | varchar(255) | values |
chrom | AFFI02000001 | varchar(255) | values |
strand | - | char(1) | values |
txStart | 6377 | int(10) unsigned | range |
txEnd | 6407 | int(10) unsigned | range |
cdsStart | 6377 | int(10) unsigned | range |
cdsEnd | 6407 | int(10) unsigned | range |
exonCount | 1 | int(10) unsigned | range |
exonStarts | 6377, | longblob | |
exonEnds | 6407, | longblob | |
score | 0 | int(11) | range |
name2 | AFFI02000001.path1.gene1 | varchar(255) | values |
cdsStartStat | incmpl | enum('none', 'unk', 'incmpl', 'cmpl') | values |
cdsEndStat | incmpl | enum('none', 'unk', 'incmpl', 'cmpl') | values |
exonFrames | 0, | longblob | |
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Sample Rows
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bin | name | chrom | strand | txStart | txEnd | cdsStart | cdsEnd | exonCount | exonStarts | exonEnds | score | name2 | cdsStartStat | cdsEndStat | exonFrames |
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585 | AFFI02000001.path1.gene1 | AFFI02000001 | - | 6377 | 6407 | 6377 | 6407 | 1 | 6377, | 6407, | 0 | AFFI02000001.path1.gene1 | incmpl | incmpl | 0, |
585 | AFFI02000001.path1.gene2 | AFFI02000001 | - | 7290 | 7458 | 7290 | 7458 | 1 | 7290, | 7458, | 0 | AFFI02000001.path1.gene2 | incmpl | incmpl | 0, |
585 | AFFI02000001.path1.gene3 | AFFI02000001 | + | 7486 | 12574 | 7486 | 12574 | 2 | 7486,12568, | 7642,12574, | 0 | AFFI02000001.path1.gene3 | incmpl | incmpl | 0,0, |
585 | AFFI02000001.path1.gene4 | AFFI02000001 | - | 13101 | 18620 | 13101 | 18620 | 2 | 13101,18573, | 13198,18620, | 0 | AFFI02000001.path1.gene4 | incmpl | incmpl | 2,0, |
585 | AFFI02000002.path1.gene1 | AFFI02000002 | + | 3767 | 3867 | 3767 | 3867 | 1 | 3767, | 3867, | 0 | AFFI02000002.path1.gene1 | incmpl | incmpl | 0, |
585 | AFFI02000003.path1.gene1 | AFFI02000003 | + | 7695 | 7712 | 7695 | 7712 | 1 | 7695, | 7712, | 0 | AFFI02000003.path1.gene1 | incmpl | incmpl | 0, |
585 | AFFI02000003.path1.gene2 | AFFI02000003 | - | 10545 | 25998 | 10545 | 25998 | 3 | 10545,19248,25978, | 11330,19280,25998, | 0 | AFFI02000003.path1.gene2 | incmpl | incmpl | 1,2,0, |
585 | AFFI02000003.path1.gene3 | AFFI02000003 | - | 26953 | 31153 | 26953 | 31153 | 2 | 26953,30912, | 27000,31153, | 0 | AFFI02000003.path1.gene3 | incmpl | incmpl | 1,0, |
585 | AFFI02000003.path1.gene4 | AFFI02000003 | + | 31985 | 38301 | 31985 | 38301 | 2 | 31985,38265, | 32051,38301, | 0 | AFFI02000003.path1.gene4 | incmpl | incmpl | 0,0, |
585 | AFFI02000003.path1.gene5 | AFFI02000003 | + | 40398 | 41022 | 40398 | 41022 | 1 | 40398, | 41022, | 0 | AFFI02000003.path1.gene5 | incmpl | incmpl | 0, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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GlimmerHMM (glimmer) Track Description
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