Schema for Gap - Gap Locations

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Schema for Gap - Gap Locations

Database: DtakGB2 Primary Table: gap Row Count: 3,970

field	example	SQL type	info
`bin`	585	`smallint(6)`	range
`chrom`	KB459967	`varchar(255)`	values
`chromStart`	5170	`int(10) unsigned`	range
`chromEnd`	5190	`int(10) unsigned`	range
`ix`	2	`int(11)`	range
`n`	N	`char(1)`	values
`size`	20	`int(10) unsigned`	range
`type`	scaffold	`varchar(255)`	values
`bridge`	yes	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	ix	n	size	type	bridge
585	KB459967	5170	5190	2	N	20	scaffold	yes
585	KB459968	834	1510	2	N	676	scaffold	yes
585	KB459969	3783	3978	2	N	195	scaffold	yes
585	KB459969	5326	5346	4	N	20	scaffold	yes
585	KB459970	1424	1787	2	N	363	scaffold	yes
585	KB459971	1260	1657	2	N	397	scaffold	yes
585	KB459971	3762	4403	4	N	641	scaffold	yes
585	KB459972	1205	2596	2	N	1391	scaffold	yes
585	KB459972	4455	5392	4	N	937	scaffold	yes
585	KB459972	6399	6844	6	N	445	scaffold	yes

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Gap (gap) Track Description


	Description This track depicts gaps — represented by black boxes — in the D. takahashii genome sequence. An assembly region is designated as a gap if the sequence contains a series of Ns. The minimum number of Ns that constitute a gap varies among assemblies.