Schema for GC Percent - GC Percent in 5-Base Windows

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Schema for GC Percent - GC Percent in 5-Base Windows

Database: DtakGB2 Primary Table: gc5Base Row Count: 38,960

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	AFFI02000001	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	5120	`int(10) unsigned`	range
`name`	AFFI02000001.0	`varchar(255)`	values
`span`	5	`int(10) unsigned`	range
`count`	1024	`int(10) unsigned`	range
`offset`	0	`int(10) unsigned`	range
`file`	/gbdb/DtakGB2/wib/gc5Base.wib	`varchar(255)`	values
`lowerLimit`	0	`double`	range
`dataRange`	100	`double`	range
`validCount`	1024	`int(10) unsigned`	range
`sumData`	38600	`double`	range
`sumSquares`	1980000	`double`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	span	count	offset	file	lowerLimit	dataRange	validCount	sumData	sumSquares
585	AFFI02000001	0	5120	AFFI02000001.0	5	1024	0	/gbdb/DtakGB2/wib/gc5Base.wib	0	100	1024	38600	1980000
585	AFFI02000001	5120	10240	AFFI02000001.1	5	1024	1024	/gbdb/DtakGB2/wib/gc5Base.wib	0	100	1024	35540	1811600
585	AFFI02000001	10240	15360	AFFI02000001.2	5	1024	2048	/gbdb/DtakGB2/wib/gc5Base.wib	0	100	1024	33700	1618800
585	AFFI02000001	15360	19815	AFFI02000001.3	5	891	3072	/gbdb/DtakGB2/wib/gc5Base.wib	0	100	891	30420	1531600
585	AFFI02000002	0	4775	AFFI02000002.4	5	955	3963	/gbdb/DtakGB2/wib/gc5Base.wib	0	100	955	40300	2230800
585	AFFI02000003	0	5120	AFFI02000003.5	5	1024	4918	/gbdb/DtakGB2/wib/gc5Base.wib	0	100	1024	35520	1788800
585	AFFI02000003	5120	10240	AFFI02000003.6	5	1024	5942	/gbdb/DtakGB2/wib/gc5Base.wib	0	100	1024	33740	1639600
585	AFFI02000003	10240	15360	AFFI02000003.7	5	1024	6966	/gbdb/DtakGB2/wib/gc5Base.wib	0	100	1024	38860	2085200
585	AFFI02000003	15360	20480	AFFI02000003.8	5	1024	7990	/gbdb/DtakGB2/wib/gc5Base.wib	0	100	1024	37640	1975200
585	AFFI02000003	20480	25600	AFFI02000003.9	5	1024	9014	/gbdb/DtakGB2/wib/gc5Base.wib	0	100	1024	40060	2111600

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GC Percent (gc5Base) Track Description


	Description The GC percent track shows the percentage of G (guanine) and C (cytosine) bases in 5-base windows. High GC content is typically associated with gene-rich areas. This track may be configured in a variety of ways to highlight different apsects of the displayed information. Click the "Graph configuration help" link for an explanation of the configuration options. Credits The data and presentation of this graph were prepared by Hiram Clawson.