Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

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Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

Database: DtakGB2 Primary Table: microsat Row Count: 61 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	AFFI02000666	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	42	`int(10) unsigned`	range
`name`	21xAT	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name
585	AFFI02000666	0	42	21xAT
585	AFFI02000804	10825	11324	166xAAT
585	AFFI02001544	4	135	43xGTC
585	AFFI02003953	8694	9354	220xTTA
585	AFFI02005824	22914	22946	16xTG
585	AFFI02005886	11717	11751	17xAT
585	AFFI02005966	16953	16992	19xGT
585	AFFI02005986	9175	9205	15xCT
585	AFFI02005993	12574	12615	20xAT
586	AFFI02006213	143015	143051	18xCA

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Microsatellite (microsat) Track Description


	Description This track displays regions that are likely to be useful as microsatellite markers. These are sequences of at least 15 perfect di-nucleotide and tri-nucleotide repeats and tend to be highly polymorphic in the population. Methods The data shown in this track are a subset of the Simple Repeats track, selecting only those repeats of period 2 and 3, with 100% identity and no indels and with at least 15 copies of the repeat. The Simple Repeats track is created using the Tandem Repeats Finder. For more information about this program, see Benson (1999). Credits Tandem Repeats Finder was written by Gary Benson. References Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217