field | example | description |
chrom | scaffold_10324 | Reference sequence chromosome or scaffold |
chromStart | 383407 | Start position in chromosome |
chromEnd | 383489 | End position in chromosome |
name | tRNA-Ser-CGA-scaffold_10324-1 | Short Name of item |
score | 1000 | Score from 0-1000 |
strand | + | + or - |
thickStart | 383407 | Start of where display should be thick (start codon) |
thickEnd | 383489 | End of where display should be thick (stop codon) |
reserved | 0,0,0 | Used as itemRgb as of 2004-11-22 |
blockCount | 1 | Number of blocks |
blockSizes | 82 | Comma separated list of block sizes |
chromStarts | 0 | Start positions relative to chromStart |
tRNAType | Ser | tRNA type |
antiCodon | CGA | Anticodon |
trnaScore | 84.6 | Infernal Score |
hmmScore | 54.00 | Primary structure-only (HMM) score |
str2Score | 30.60 | Secondary structure-only score |
isotypeCM | Ser | Isotype covariance model |
isotypeScore | 116.1 | Isotype score |
notes | high confidence set | EukHighConfidenceFilter notes |