Schema for CpG Islands - CpG Islands Identified by newcpgreport

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Schema for CpG Islands - CpG Islands Identified by newcpgreport

Database: DvirCAF1 Primary Table: cpg_islands Row Count: 56,454 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	scaffold_10001	`varchar(255)`	values
`chromStart`	2783	`int(10) unsigned`	range
`chromEnd`	3006	`int(10) unsigned`	range
`name`	cpg_14256	`varchar(255)`	values
`score`	154	`int(10) unsigned`	range
`strand`	+	`char(1)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand
585	scaffold_10001	2783	3006	cpg_14256	154	+
585	scaffold_10001	6364	6652	cpg_14257	98	+
585	scaffold_10002	4328	4676	cpg_14258	95	+
585	scaffold_10005	734	955	cpg_14259	74	+
585	scaffold_10005	2313	2536	cpg_14260	77	+
585	scaffold_10005	2537	3324	cpg_14261	86	+
585	scaffold_10005	3524	3764	cpg_14262	61	+
585	scaffold_10005	7514	7828	cpg_14263	92	+
585	scaffold_10005	8014	8273	cpg_14264	100	+
585	scaffold_10005	8470	8755	cpg_14265	75	+

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.