Schema for Gap - Gap Locations

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

Schema for Gap - Gap Locations

Database: DvirCAF1 Primary Table: gap Row Count: 4,852 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(6)`	range
`chrom`	scaffold_1	`varchar(255)`	values
`chromStart`	2266	`int(10) unsigned`	range
`chromEnd`	2853	`int(10) unsigned`	range
`ix`	3	`int(11)`	range
`n`	N	`char(1)`	values
`size`	587	`int(10) unsigned`	range
`type`	contig	`varchar(255)`	values
`bridge`	yes	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	ix	n	size	type	bridge
585	scaffold_1	2266	2853	3	N	587	contig	yes
585	scaffold_10001	1436	1981	10	N	545	contig	yes
585	scaffold_10002	6050	6059	13	N	9	contig	yes
585	scaffold_10005	10973	12349	18	N	1376	contig	yes
585	scaffold_10010	2448	2710	25	N	262	contig	yes
585	scaffold_10012	756	2125	29	N	1369	contig	yes
585	scaffold_10017	732	2967	36	N	2235	contig	yes
585	scaffold_10022	1231	2574	44	N	1343	contig	yes
585	scaffold_10024	1456	2766	48	N	1310	contig	yes
585	scaffold_10034	1393	2996	60	N	1603	contig	yes

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Gap (gap) Track Description


	Description This track depicts gaps — represented by black boxes — in the D. virilis genome sequence. An assembly region is designated as a gap if the sequence contains a series of Ns. The minimum number of Ns that constitute a gap varies among assemblies.