Schema for GC Percent - GC Percent in 5-Base Windows

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Schema for GC Percent - GC Percent in 5-Base Windows

Database: DvirCAF1 Primary Table: gc5Base Row Count: 47,519 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	scaffold_0	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	4375	`int(10) unsigned`	range
`name`	scaffold_0.0	`varchar(255)`	values
`span`	5	`int(10) unsigned`	range
`count`	875	`int(10) unsigned`	range
`offset`	0	`int(10) unsigned`	range
`file`	/gbdb/DvirCAF1/wib/gc5Base.wib	`varchar(255)`	values
`lowerLimit`	0	`double`	range
`dataRange`	100	`double`	range
`validCount`	875	`int(10) unsigned`	range
`sumData`	28520	`double`	range
`sumSquares`	1367200	`double`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	span	count	offset	file	lowerLimit	dataRange	validCount	sumData	sumSquares
585	scaffold_0	0	4375	scaffold_0.0	5	875	0	/gbdb/DvirCAF1/wib/gc5Base.wib	0	100	875	28520	1367200
585	scaffold_1	0	4990	scaffold_1.1	5	998	875	/gbdb/DvirCAF1/wib/gc5Base.wib	0	100	882	28680	1399200
585	scaffold_10	0	1600	scaffold_10.2	5	320	1873	/gbdb/DvirCAF1/wib/gc5Base.wib	0	100	320	11360	540000
585	scaffold_100	0	1450	scaffold_100.3	5	290	2193	/gbdb/DvirCAF1/wib/gc5Base.wib	0	100	290	9580	463600
585	scaffold_1000	0	2385	scaffold_1000.4	5	477	2483	/gbdb/DvirCAF1/wib/gc5Base.wib	0	100	477	19420	1110800
585	scaffold_10000	0	2425	scaffold_10000.5	5	485	2960	/gbdb/DvirCAF1/wib/gc5Base.wib	0	100	485	15320	701600
585	scaffold_10001	0	5120	scaffold_10001.6	5	1024	3445	/gbdb/DvirCAF1/wib/gc5Base.wib	0	100	916	35455	1888420
585	scaffold_10001	5120	9180	scaffold_10001.7	5	812	4469	/gbdb/DvirCAF1/wib/gc5Base.wib	0	100	812	29380	1560400
585	scaffold_10002	0	5120	scaffold_10002.8	5	1024	5281	/gbdb/DvirCAF1/wib/gc5Base.wib	0	100	1024	45580	2589200
585	scaffold_10002	5120	7240	scaffold_10002.9	5	424	6305	/gbdb/DvirCAF1/wib/gc5Base.wib	0	100	423	11020	502800

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GC Percent (gc5Base) Track Description


	Description The GC percent track shows the percentage of G (guanine) and C (cytosine) bases in 5-base windows. High GC content is typically associated with gene-rich areas. This track may be configured in a variety of ways to highlight different apsects of the displayed information. Click the "Graph configuration help" link for an explanation of the configuration options. Credits The data and presentation of this graph were prepared by Hiram Clawson.