Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

Database: DvirCAF1 Primary Table: microsat Row Count: 3,337 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	scaffold_10001	`varchar(255)`	values
`chromStart`	8933	`int(10) unsigned`	range
`chromEnd`	8973	`int(10) unsigned`	range
`name`	20xAT	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name
585	scaffold_10001	8933	8973	20xAT
585	scaffold_10007	506	539	16xAT
585	scaffold_10048	529	569	20xAT
585	scaffold_10055	6164	6195	15xAT
585	scaffold_10175	3764	3800	18xAT
585	scaffold_10282	1054	1092	19xAT
585	scaffold_10283	261	297	18xAT
585	scaffold_10296	417	455	19xAT
585	scaffold_10303	87	123	18xAT
585	scaffold_10322	55436	55478	21xCA

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Microsatellite (microsat) Track Description


	Description This track displays regions that are likely to be useful as microsatellite markers. These are sequences of at least 15 perfect di-nucleotide and tri-nucleotide repeats and tend to be highly polymorphic in the population. Methods The data shown in this track are a subset of the Simple Repeats track, selecting only those repeats of period 2 and 3, with 100% identity and no indels and with at least 15 copies of the repeat. The Simple Repeats track is created using the Tandem Repeats Finder. For more information about this program, see Benson (1999). Credits Tandem Repeats Finder was written by Gary Benson. References Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217

Description