Schema for Tallymer - Repetitive Regions Identified by Tallymer

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Database: DvirCAF1 Primary Table: tallymer Data last updated: 2017-08-06
Big Bed File: /gbdb/DvirCAF1/bbi/DvirCAF1.tallymer.bb
Item Count: 241,419
Format description: Browser Extensible Data

field	example	description
`chrom`	scaffold_0	Reference sequence chromosome or scaffold
`chromStart`	0	Start position in chromosome
`chromEnd`	269	End position in chromosome
`name`	tallymer_16	Name of item.

Sample Rows

chrom	chromStart	chromEnd	name
scaffold_0	0	269	tallymer_16
scaffold_0	271	706	tallymer_17
scaffold_0	707	2553	tallymer_18
scaffold_0	2554	2969	tallymer_19
scaffold_0	2970	3794	tallymer_20
scaffold_0	3795	4376	tallymer_21

Tallymer (tallymer) Track Description


	Description This evidence track shows the tallymer analysis of the D. virilis genome. References The Tallymer software is available as part of the GenomeTools package. Kurtz S., Narechania A., Stein J.C., Ware D. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics 2008, 9:517.

Description

References