Schema for rRNA Genes - Ribosomal RNA Genes Identified by RNAmmer

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

Schema for rRNA Genes - Ribosomal RNA Genes Identified by RNAmmer

Database: DyakCAF1 Primary Table: RNAmmer Row Count: 64 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	749	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	21574287	`int(10) unsigned`	range
`chromEnd`	21574402	`int(10) unsigned`	range
`name`	RNAmmer_8s_rRNA_1	`varchar(255)`	values
`score`	77	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`hmmScore`	77	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	hmmScore
749	chr2L	21574287	21574402	RNAmmer_8s_rRNA_1	77	+	77
749	chr2L	21574650	21574765	RNAmmer_8s_rRNA_2	77	+	77.8
688	chr2R	13551178	13551293	RNAmmer_8s_rRNA_3	77	+	77.8
688	chr2R	13551550	13551665	RNAmmer_8s_rRNA_4	59	+	59.7
688	chr2R	13552388	13552503	RNAmmer_8s_rRNA_5	70	+	70.3
688	chr2R	13552760	13552875	RNAmmer_8s_rRNA_6	77	+	77.8
688	chr2R	13553123	13553238	RNAmmer_8s_rRNA_7	77	+	77.8
688	chr2R	13553495	13553610	RNAmmer_8s_rRNA_8	77	+	77.8
688	chr2R	13554938	13555053	RNAmmer_8s_rRNA_9	77	+	77.8
688	chr2R	13555309	13555424	RNAmmer_8s_rRNA_10	77	+	77.8

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

rRNA Genes (RNAmmer) Track Description


	Description This track shows the rRNA gene predictions produced by RNAmmer using the parameters: `-S euk -m lsu,ssu,tsu`. References Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 2007;35(9):3100-8.