Schema for tRNA Genes - Transfer RNA Genes Identified by tRNAscan-SE 2.0 |
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Database: DyakCAF1 Primary Table: tRNAscanSE2Details Data last updated: 2019-07-06
Big Bed File: /gbdb/DyakCAF1/bbi/DyakCAF1.tRNAscanSE2Details.bb
Item Count: 333
Format description: tRNAs identified by tRNAscan-SE 2.0
| field | example | description |
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| chrom | chr2L | Reference sequence chromosome or scaffold | | chromStart | 13956761 | Start position in chromosome | | chromEnd | 13956833 | End position in chromosome | | name | tRNA-Asp-GTC-chr2L-16 | Short Name of item | | score | 1000 | Score from 0-1000 | | strand | + | + or - | | thickStart | 13956761 | Start of where display should be thick (start codon) | | thickEnd | 13956833 | End of where display should be thick (stop codon) | | reserved | 0,0,0 | Used as itemRgb as of 2004-11-22 | | blockCount | 1 | Number of blocks | | blockSizes | 72 | Comma separated list of block sizes | | chromStarts | 0 | Start positions relative to chromStart | | tRNAType | Asp | tRNA type | | antiCodon | GTC | Anticodon | | trnaScore | 66.7 | Infernal Score | | hmmScore | 37.40 | Primary structure-only (HMM) score | | str2Score | 29.30 | Secondary structure-only score | | isotypeCM | Asp | Isotype covariance model | | isotypeScore | 112.1 | Isotype score | | notes | high confidence set | EukHighConfidenceFilter notes |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts | tRNAType | antiCodon | trnaScore | hmmScore | str2Score | isotypeCM | isotypeScore | notes |
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| chr2L | 13956761 | 13956833 | tRNA-Asp-GTC-chr2L-16 | 1000 | + | 13956761 | 13956833 | 0,0,0 | 1 | 72 | 0 | Asp | GTC | 66.7 | 37.40 | 29.30 | Asp | 112.1 | high confidence set |
| chr2L | 13957128 | 13957200 | tRNA-Asp-GTC-chr2L-58 | 1000 | - | 13957128 | 13957200 | 0,0,0 | 1 | 72 | 0 | Asp | GTC | 66.7 | 37.40 | 29.30 | Asp | 112.1 | high confidence set |
| chr2L | 14102784 | 14102856 | tRNA-Gln-CTG-chr2L-57 | 1000 | - | 14102784 | 14102856 | 0,0,0 | 1 | 72 | 0 | Gln | CTG | 68.9 | 43.40 | 25.50 | Gln | 108.9 | high confidence set |
| chr2L | 14604701 | 14604773 | tRNA-Pro-AGG-chr2L-17 | 1000 | + | 14604701 | 14604773 | 0,0,0 | 1 | 72 | 0 | Pro | AGG | 68.0 | 43.60 | 24.40 | Pro | 112.3 | high confidence set |
| chr2L | 14627553 | 14627624 | tRNA-Gly-GCC-chr2L-18 | 1000 | + | 14627553 | 14627624 | 0,0,0 | 1 | 71 | 0 | Gly | GCC | 80.1 | 59.20 | 20.90 | Gly | 108.6 | high confidence set |
| chr2L | 14628535 | 14628606 | tRNA-Gly-GCC-chr2L-56 | 1000 | - | 14628535 | 14628606 | 0,0,0 | 1 | 71 | 0 | Gly | GCC | 80.1 | 59.20 | 20.90 | Gly | 108.6 | high confidence set |
| chr2L | 14628857 | 14628928 | tRNA-Gly-GCC-chr2L-55 | 1000 | - | 14628857 | 14628928 | 0,0,0 | 1 | 71 | 0 | Gly | GCC | 80.1 | 59.20 | 20.90 | Gly | 108.6 | high confidence set |
| chr2L | 14640797 | 14640868 | tRNA-Gly-GCC-chr2L-54 | 1000 | - | 14640797 | 14640868 | 0,0,0 | 1 | 71 | 0 | Gly | GCC | 80.1 | 59.20 | 20.90 | Gly | 108.6 | high confidence set |
| chr2L | 14641102 | 14641173 | tRNA-Gly-GCC-chr2L-53 | 1000 | - | 14641102 | 14641173 | 0,0,0 | 1 | 71 | 0 | Gly | GCC | 80.1 | 59.20 | 20.90 | Gly | 108.6 | high confidence set |
| chr2L | 14641267 | 14641338 | tRNA-Gly-CCC-chr2L-52 | 1000 | - | 14641267 | 14641338 | 0,0,0 | 1 | 71 | 0 | Gly | CCC | 78.6 | 52.90 | 25.70 | Gly | 100.7 | high confidence set |
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tRNA Genes (tRNAscanSE2Details) Track Description
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