Schema for GC Percent - GC Percent in 5-Base Windows

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Schema for GC Percent - GC Percent in 5-Base Windows

Database: DyakCAF1 Primary Table: gc5Base Row Count: 37,799 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	5120	`int(10) unsigned`	range
`name`	chr2L.4655	`varchar(255)`	values
`span`	5	`int(10) unsigned`	range
`count`	1024	`int(10) unsigned`	range
`offset`	4720029	`int(10) unsigned`	range
`file`	/gbdb/DyakCAF1/wib/gc5Base.wib	`varchar(255)`	values
`lowerLimit`	0	`double`	range
`dataRange`	100	`double`	range
`validCount`	1024	`int(10) unsigned`	range
`sumData`	43620	`double`	range
`sumSquares`	2499600	`double`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	span	count	offset	file	lowerLimit	dataRange	validCount	sumData	sumSquares
585	chr2L	0	5120	chr2L.4655	5	1024	4720029	/gbdb/DyakCAF1/wib/gc5Base.wib	0	100	1024	43620	2499600
585	chr2L	5120	10240	chr2L.4656	5	1024	4721053	/gbdb/DyakCAF1/wib/gc5Base.wib	0	100	1024	34160	1688800
585	chr2L	10240	15360	chr2L.4657	5	1024	4722077	/gbdb/DyakCAF1/wib/gc5Base.wib	0	100	1024	37800	1984000
585	chr2L	15360	20480	chr2L.4658	5	1024	4723101	/gbdb/DyakCAF1/wib/gc5Base.wib	0	100	1024	39460	2129200
585	chr2L	20480	25600	chr2L.4659	5	1024	4724125	/gbdb/DyakCAF1/wib/gc5Base.wib	0	100	1024	42180	2311600
585	chr2L	25600	30720	chr2L.4660	5	1024	4725149	/gbdb/DyakCAF1/wib/gc5Base.wib	0	100	825	37390	2126100
585	chr2L	30720	35840	chr2L.4661	5	1024	4726173	/gbdb/DyakCAF1/wib/gc5Base.wib	0	100	1024	44460	2482800
585	chr2L	35840	40960	chr2L.4662	5	1024	4727197	/gbdb/DyakCAF1/wib/gc5Base.wib	0	100	1024	41860	2263600
585	chr2L	40960	46080	chr2L.4663	5	1024	4728221	/gbdb/DyakCAF1/wib/gc5Base.wib	0	100	1024	40820	2164400
585	chr2L	46080	51200	chr2L.4664	5	1024	4729245	/gbdb/DyakCAF1/wib/gc5Base.wib	0	100	1024	39580	2088400

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GC Percent (gc5Base) Track Description


	Description The GC percent track shows the percentage of G (guanine) and C (cytosine) bases in 5-base windows. High GC content is typically associated with gene-rich areas. This track may be configured in a variety of ways to highlight different apsects of the displayed information. Click the "Graph configuration help" link for an explanation of the configuration options. Credits The data and presentation of this graph were prepared by Hiram Clawson.