Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

Database: DyakCAF1 Primary Table: microsat Row Count: 209 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	595	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	1321568	`int(10) unsigned`	range
`chromEnd`	1321598	`int(10) unsigned`	range
`name`	15xAC	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name
595	chr2L	1321568	1321598	15xAC
597	chr2L	1602579	1602609	15xTG
600	chr2L	2085693	2085735	21xCA
605	chr2L	2671254	2671284	15xAT
610	chr2L	3319510	3319541	15xTA
612	chr2L	3654962	3654992	15xCA
614	chr2L	3897201	3897237	18xAG
619	chr2L	4459062	4459092	15xCA
635	chr2L	6611996	6612030	17xAC
644	chr2L	7802751	7802786	17xTG

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Microsatellite (microsat) Track Description


	Description This track displays regions that are likely to be useful as microsatellite markers. These are sequences of at least 15 perfect di-nucleotide and tri-nucleotide repeats and tend to be highly polymorphic in the population. Methods The data shown in this track are a subset of the Simple Repeats track, selecting only those repeats of period 2 and 3, with 100% identity and no indels and with at least 15 copies of the repeat. The Simple Repeats track is created using the Tandem Repeats Finder. For more information about this program, see Benson (1999). Credits Tandem Repeats Finder was written by Gary Benson. References Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217

Description