Schema for Tallymer - Repetitive Regions Identified by Tallymer

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Database: DyakCAF1 Primary Table: tallymer Data last updated: 2017-08-06
Big Bed File: /gbdb/DyakCAF1/bbi/DyakCAF1.tallymer.bb
Item Count: 201,771
Format description: Browser Extensible Data

field	example	description
`chrom`	chr2L	Reference sequence chromosome or scaffold
`chromStart`	15011766	Start position in chromosome
`chromEnd`	15011809	End position in chromosome
`name`	tallymer_123451	Name of item.

Sample Rows

chrom	chromStart	chromEnd	name
chr2L	15011766	15011809	tallymer_123451
chr2L	15012342	15013146	tallymer_123453
chr2L	15013341	15013418	tallymer_123454
chr2L	15013427	15013529	tallymer_123455
chr2L	15013530	15013786	tallymer_123456
chr2L	15013787	15013862	tallymer_123457
chr2L	15013863	15014012	tallymer_123458
chr2L	15014013	15014055	tallymer_123459
chr2L	15014140	15014397	tallymer_123461
chr2L	15014398	15015288	tallymer_123462

Tallymer (tallymer) Track Description


	Description This evidence track shows the tallymer analysis of the D. yakuba genome. References The Tallymer software is available as part of the GenomeTools package. Kurtz S., Narechania A., Stein J.C., Ware D. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics 2008, 9:517.

Description

References