Schema for modENCODE Histones ChIP-Seq - modENCODE Chromatin State Mapping Using ChIP-Seq
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Database: dm6 Primary Table: L3_H3K9me2_macs Data last updated: 2016-01-26
Big Bed File: /gbdb/dm6/bbi/dm6_H3K9me2.gappedPeak.bb Item Count: 13,170
Format description: This format is used to provide called regions of signal enrichment based on pooled, normalized (interpreted) data where the regions may be spliced or incorporate gaps in the genomic sequence. It is a BED12+3 format.
field | example | description |
chrom | chr2L | Reference sequence chromosome or scaffold | chromStart | 15683894 | Pseudogene alignment start position | chromEnd | 15685220 | Pseudogene alignment end position | name | dm6_H3K9me2_peak_536 | Name of pseudogene | score | 32 | Score of pseudogene with gene (0-1000) | strand | . | + or - or . for unknown | thickStart | 15683894 | Start of where display should be thick (start codon) | thickEnd | 15685220 | End of where display should be thick (stop codon) | reserved | 0 | Always zero for now | blockCount | 6 | Number of blocks | blockSizes | 1,346,73,82,368,1 | Comma separated list of block sizes | chromStarts | 0,29,659,788,952,1325 | Start positions relative to chromStart | signalValue | 1.55607 | Measurement of average enrichment for the region | pValue | 4.06455 | Statistical significance of signal value (-log10). Set to -1 if not used. | qValue | 3.24792 | Statistical significance with multiple-test correction applied (FDR). Set to -1 if not used. |
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Sample Rows
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chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts | signalValue | pValue | qValue |
chr2L | 15683894 | 15685220 | dm6_H3K9me2_peak_536 | 32 | . | 15683894 | 15685220 | 0 | 6 | 1,346,73,82,368,1 | 0,29,659,788,952,1325 | 1.55607 | 4.06455 | 3.24792 |
chr2L | 15686319 | 15686654 | dm6_H3K9me2_peak_537 | 11 | . | 15686319 | 15686654 | 0 | 2 | 330,1 | 0,334 | 1.22794 | 1.76662 | 1.19581 |
chr2L | 15718892 | 15720181 | dm6_H3K9me2_peak_538 | 14 | . | 15718892 | 15720181 | 0 | 6 | 1,158,131,298,318,1 | 0,3,253,574,962,1288 | 1.25761 | 2.04214 | 1.45450 |
chr2L | 15720595 | 15720714 | dm6_H3K9me2_peak_539 | 8 | . | 15720595 | 15720714 | 0 | 3 | 1,115,1 | 0,3,118 | 1.12274 | 1.36929 | 0.85359 |
chr2L | 15721443 | 15721649 | dm6_H3K9me2_peak_540 | 13 | . | 15721443 | 15721649 | 0 | 2 | 1,203 | 0,3 | 1.26026 | 1.89715 | 1.30730 |
chr2L | 15723491 | 15724056 | dm6_H3K9me2_peak_541 | 14 | . | 15723491 | 15724056 | 0 | 4 | 1,97,180,1 | 0,64,322,564 | 1.30666 | 2.04411 | 1.42458 |
chr2L | 15726944 | 15727467 | dm6_H3K9me2_peak_542 | 12 | . | 15726944 | 15727467 | 0 | 2 | 1,1 | 0,522 | 1.25264 | 1.86150 | 1.27783 |
chr2L | 15751537 | 15751735 | dm6_H3K9me2_peak_543 | 8 | . | 15751537 | 15751735 | 0 | 3 | 1,134,1 | 0,63,197 | 1.15649 | 1.39153 | 0.86190 |
chr2L | 15779094 | 15779373 | dm6_H3K9me2_peak_544 | 22 | . | 15779094 | 15779373 | 0 | 2 | 1,1 | 0,278 | 1.46800 | 2.92008 | 2.20169 |
chr2L | 15780085 | 15780548 | dm6_H3K9me2_peak_545 | 16 | . | 15780085 | 15780548 | 0 | 3 | 1,105,1 | 0,1,462 | 1.34724 | 2.28365 | 1.63618 |
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modENCODE Histones ChIP-Seq (modENCODE_histones_chipseq) Track Description
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Description
This track shows the results of the ChIP-Seq analysis of multiple histone modifications at
different developmental stages using MACS.
The ChIP-Seq data were produced as part of the modENCODE project.
Credits
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