D. ananassae Nanopore Chain/Net Track Settings

D. ananassae Nanopore Chain/Net (All Comparative Genomics tracks)

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All	*Clade*	Sophophora
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	hide	D. ananassae miniasm Chain	D. ananassae (Oct. 2018 (GEP/DanaNanopore2)) miniasm Chained Alignments	Schema
	hide	D. ananassae miniasm Net	D. ananassae (Oct. 2018 (GEP/DanaNanopore2)) miniasm Alignment Net	Schema

Description

Scaffolds from the D. ananassae Nanopore assembly are aligned against the D. ananassae genome assembly (DanaCAF1) using LAST with default parameters. The alignments are then processed using the UCSC whole genome alignment protocol (i.e. chaining and netting).

References

Chain/Net

Kent WJ, Baertsch R, Hinrichs A, Miller W, and Haussler D. Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes. Proc Natl Acad Sci USA 2003 100(20): 11484-11489.

LAST

Kielbasa SM, Wan R, Sato K, Horton P, Frith MC. Adaptive seeds tame genomic sequence comparison. Genome Res. 2011 Mar;21(3):487-93.