Nanopore Alignments Track Settings
 
D. ananassae Nanopore Read Alignments   (All Assembly Tracks)

Display mode:   

Display read names
Attempt to join paired end reads by name
Minimum alignment quality:

Color track by bases: Help on base coloring

Alignment Gap/Insertion Display Options Help on display options
Draw double horizontal lines when both genome and query have an insertion
Draw a vertical purple line for an insertion at the beginning or end of the
query, orange for insertion in the middle of the query
Draw a vertical green line where query has a polyA tail insertion

Additional coloring modes:
Color by strand (blue for +, red for -)
Use gray for
Use R,G,B colors specified in user-defined tag
No additional coloring

Display data as a density graph:

BAM configuration help

View table schema
Data last updated at UCSC: 2022-10-20

Description

This track shows the alignments of D. ananassae Nanopore reads against the D. ananassae assembly. The Nanopore reads were mapped against the D. ananassae genome assembly using Minimap2.

References

Li H. Minimap2: pairwise alignment for nucleotide sequences. Bioinformatics. 2018 Sep 15;34(18):3094-3100.

Miller DE, Staber C, Zeitlinger J, Hawley RS. Highly Contiguous Genome Assemblies of 15 Drosophila Species Generated Using Nanopore Sequencing. G3 (Bethesda). 2018 Oct 3;8(10):3131-3141.