Description

RNA-seq reads generated by the modENCODE project were mapped against the D. mojavensis genome using TopHat2. The aligned RNA-seq reads are assembled together using CEM.

References

Li W, Jiang T. Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads. Bioinformatics. 2012 Nov 15;28(22):2914-21.

The RNA-Seq data were submitted by the modENCODE project. The original RNA-Seq dataset can be obtained from the NCBI GEO database under the accession number GSE28078.