Description

This track depicts the differences between the D. mojavensis Comparative Analysis Freeze 1 (CAF1) assembly and the improved D. mojavensis assembly produced by the GEP. The two assemblies are aligned against each other using LAST with default parameters followed by the UCSC whole genome alignment protocol.

References

Chain/Net

Kent WJ, Baertsch R, Hinrichs A, Miller W, and Haussler D. Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes. Proc Natl Acad Sci USA 2003 100(20): 11484-11489.

LAST

Kielbasa SM, Wan R, Sato K, Horton P, Frith MC. Adaptive seeds tame genomic sequence comparison. Genome Res. 2011 Mar;21(3):487-93.