Head Tissues CEM Transcripts Track Settings

CEM Transcripts using modENCODE RNA-Seq from Head Tissues (All RNA Seq Tracks)

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	hide Configure	Female Heads	CEM transcripts from Female Head Tissues	Schema
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Description

RNA-seq reads generated by the modENCODE project were mapped against the D. mojavensis genome using TopHat2. The aligned RNA-seq reads are assembled together using CEM.

References

Li W, Jiang T. Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads. Bioinformatics. 2012 Nov 15;28(22):2914-21.

The RNA-Seq data were submitted by the modENCODE project. The original RNA-Seq dataset can be obtained from the NCBI GEO database under the accession number GSE20882.