Description

Genomic scaffolds from the D. mojavensis Comparative Analysis Freeze 1 (CAF1) assembly were aligned against the improved D. mojavensis assembly produced by the Genomics Education Partnership using LAST with default parameters. The alignments are then chained and netted together using the UCSC whole genome alignment protocol.

References

Chain/Net

Kent WJ, Baertsch R, Hinrichs A, Miller W, and Haussler D. Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes. Proc Natl Acad Sci USA 2003 100(20): 11484-11489.

LAST

Kielbasa SM, Wan R, Sato K, Horton P, Frith MC. Adaptive seeds tame genomic sequence comparison. Genome Res. 2011 Mar;21(3):487-93.