RNA-Seq Coverage Track Settings

D. grimshawi RNA-Seq Read Coverage (All RNA Seq Tracks)

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	full Configure	Adult Females	RNA-Seq from Adult Females	Schema
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Description

This track was created by mapping D. grimshawi RNA-Seq reads against the D. grimshawi DgriCAF1 assembly using HISAT2. The RNA-Seq read coverage tracks were produced by the genomecov subprogram in bedtools. The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the accession number SRP073087.

References

The RNA-Seq data were produced as part of the BioProject PRJNA317989: Expression profiling Hawaiian Drosophila species, tissues, and sexes.

Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements Nat Methods. 2015 Apr;12(4):357-60.

Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010 Mar 15;26(6):841-2.