Description
This track was created by mapping D. obscura RNA-Seq reads against the D. obscura DobsGB1 assembly using
HISAT2. The RNA-Seq
read coverage tracks were produced by the genomecov subprogram in
bedtools.
The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the
BioProject accession number
PRJDB4576.
References
Nozawa M, Onizuka K, Fujimi M, Ikeo K, Gojobori T.
Accelerated pseudogenization on the neo-X chromosome in Drosophila miranda. Nat Commun. 2016 Nov 29;7:13659.
Kim D, Langmead B, Salzberg SL.
HISAT: a fast spliced aligner with low memory requirements
Nat Methods. 2015 Apr;12(4):357-60.
Quinlan AR, Hall IM.
BEDTools: a flexible suite of utilities for comparing genomic features.
Bioinformatics. 2010 Mar 15;26(6):841-2.
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