Splice Junctions Track Settings
 
Splice Junctions Predicted by regtools using D. miranda RNA-Seq   (All RNA Seq Tracks)

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Show only items with score at or above:   (range: 0 to 1000)

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Data last updated at UCSC: 2022-10-20

Description

This track shows the exon junctions extracted from spliced RNA-Seq reads that have been aligned to the genome. The splice junctions were identified by the regtools junctions extract subprogram. The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the accession number SRP009365.

The splice junction predictions from the different libraries are filtered and merged together into a single set of predictions. The predictions are color-coded based on the number of reads supporting the junction:

ColorNumber of reads
> 1000
500-999
100-499
50-99
10-49
< 10

References

Zhou Q, Bachtrog D. Sex-specific adaptation drives early sex chromosome evolution in Drosophila. Science. 2012 Jul 20;337(6092):341-5.