Eye Discs ATAC-Seq Track Settings
 
ATAC-Seq of D. simulans Eye Discs   (All Expression and Regulation tracks)

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3rd Instar
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 Eye Discs IDR  IDR Peaks for D. simulans Eye-antennal Discs   Schema 
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 Eye Discs MACS  MACS2 Peaks for D. simulans Eye-antennal Discs   Schema 
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 Eye Discs logLR  Log Likelihood Enrichment for D. simulans Eye-antennal Discs   Schema 

Description

These tracks show the results from Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq) of D. simulans eye-antennal discs from 3rd instar larvae. The peak calls and the log likelihood ratio evidence tracks were produced by MACS2. The Irreproducible Discovery Rate (IDR) peak calls were produced by the idr program using a global IDR threshold of 0.05.

The datasets were obtained from the NCBI BioProject database under the accession number PRJNA397749.

References

Jacobs J, Atkins M, Davie K, Imrichova H, Romanelli L, Christiaens V, Hulselmans G, Potier D, Wouters J, Taskiran II, Paciello G, González-Blas CB, Koldere D, Aibar S, Halder G, Aerts S. The transcription factor Grainy head primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes. Nat Genet. 2018 Jul;50(7):1011-1020.

Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.