RNA-Seq Coverage Track Settings

D. sechellia RNA-Seq Read Coverage (All RNA Seq Tracks)

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	full Configure	Adult Females	RNA-Seq from Adult Females	Schema
	full Configure	Adult Males	RNA-Seq from Adult Males	Schema

Description

This track was created by mapping D. sechellia RNA-Seq reads against the D. sechellia DsecCAF1 assembly using HISAT2. The RNA-Seq read coverage tracks were produced by the genomecov subprogram in bedtools. The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the BioProject accession numbers PRJNA205470 (adult females; McManus CJ et al., 2014) and PRJNA414017 (adult males; Ma S et al., 2018).

References

Ma S, Avanesov AS, Porter E, Lee BC, Mariotti M, Zemskaya N, Guigo R, Moskalev AA, Gladyshev VN. Comparative transcriptomics across 14 Drosophila species reveals signatures of longevity. Aging Cell. 2018 Apr 19:e12740.

McManus CJ, Coolon JD, Eipper-Mains J, Wittkopp PJ, Graveley BR. Evolution of splicing regulatory networks in Drosophila. Genome Res. 2014 May;24(5):786-96.

Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements Nat Methods. 2015 Apr;12(4):357-60.

Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010 Mar 15;26(6):841-2.