RNA-Seq Coverage Track Settings

D. arizonae RNA-Seq Read Coverage (All RNA Seq Tracks)

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Track height:	pixels (range: 11 to 110)
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Vertical viewing range:	min:	max: (range: 1 to 2e+06)
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	full	HPLS Diet	RNA-Seq from 3rd Instar Larvae with High Protein Low Sugar Diet	Schema

Description

This track was created by mapping D. arizonae RNA-Seq reads against the D. arizonae DariGB1 assembly using HISAT2. The RNA-Seq read coverage tracks were produced by the genomecov subprogram in bedtools. The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the BioProject accession number PRJNA395148.

References

Nazario-Yepiz NO, Loustalot-Laclette MR, Carpinteyro-Ponce J, Abreu-Goodger C, Markow TA. Transcriptional responses of ecologically diverse Drosophila species to larval diets differing in relative sugar and protein ratios. PLoS One. 2017 Aug 23;12(8):e0183007.

Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements Nat Methods. 2015 Apr;12(4):357-60.

Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010 Mar 15;26(6):841-2.