TE Density Track Settings
 
RepeatMasker Transposon Density (1kb window, 100bp step size)   (All Variation and Repeats tracks)

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Type of graph:
Track height: pixels (range: 11 to 110)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 1)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
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Data last updated at UCSC: 2017-08-11 12:57:06

Description

This track shows the density of transposon fragments identified by RepeatMasker in a 1kb sliding window (100bp step size) using the RepBase Drosophila library.

References

Smit AFA, Hubley R, Green P. RepeatMasker Open-3.0. http://www.repeatmasker.org. 1996-2010.

Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res. 2005;110(1-4):462-7.