RepeatModeler Track Settings

Transposons Identified by RepeatModeler (All Variation and Repeats tracks)

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Show only items with score at or above: (range: 0 to 1000)

Display data as a density graph:

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	hide Configure	DNA Trans.	DNA Transposons	Schema
	hide Configure	LINE	Non-LTR Retrotransposons	Schema
	hide Configure	LTR	LTR Retrotransposons	Schema
	hide Configure	Helitrons	Rolling-Circle Helitrons	Schema
	hide Configure	Unclassified	Unclassified Transposons	Schema

Description

This track shows the transposon fragments identified by RepeatMasker using the species-specific RepeatModeler library constructed by the GEP. The consensus sequences produced by RepeatModeler were reclassified using the protocol described in the supplemental methods section.

References

Smit, AFA, Hubley, R. RepeatModeler Open-1.0. http://www.repeatmasker.org. 2008-2010.

Smit AFA, Hubley R, Green P. RepeatMasker Open-3.0. http://www.repeatmasker.org. 1996-2010.