modENCODE RNA-Seq Coverage Track Settings

modENCODE D. kikkawai RNA-Seq Coverage (All RNA Seq Tracks)

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Vertical viewing range:	min:	max: (range: 1 to 5e+06)
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	full Configure	Adult Females	modENCODE RNA-Seq from D. kikkawai Adult Females	Schema
	full Configure	Adult Males	modENCODE RNA-Seq from D. kikkawai Adult Males	Schema
	full Configure	Mixed Embryos	modENCODE RNA-Seq from D. kikkawai Mixed Embryos	Schema

Description

This track was created by mapping D. kikkawai RNA-Seq reads (generated by the modENCODE project) against the D. kikkawai DkikGB2 assembly using Bowtie2 and TopHat. The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the BioProject accession number PRJNA63469.

References

Chen ZX et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res. 2014 Jul;24(7):1209-23.

Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics. 2009 May 1;25(9):1105-11.