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Configure Tracks on UCSC Genome Browser: D. biarmipes Apr. 2013 (BCM-HGSC) (DbiaWGS2)
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-   Mapping and Sequencing Tracks    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Assembly Tracks    
GEP V1 projects Mapping GEP Version 1 Projects to New Assembly
D. biarmipes v1 Chain Version 1 D. biarmipes (March 2012 (BCM-HGSC)) Chained Alignments
D. biarmipes v1 Net Version 1 D. biarmipes (March 2012 (BCM-HGSC)) Alignment Net
D. biarmipes v1 Difference Difference with D. biarmipes Version 1 Assembly
Finishing Projects GEP Sequence Improvement Projects
Assembly Problems Assembly Problems Identified by Consed bamscape
Read Coverage Genomic Read Coverage
-   Genes and Gene Prediction Tracks    
D. mel Transcripts Spaln Alignment of D. melanogaster Transcripts
D. mel Proteins Spaln Alignment of D. melanogaster Proteins
Sim4cc D. mel Transcripts Sim4cc Alignment of D. melanogaster Transcripts
MAKER Proteins Spaln Alignment of Proteins Predicted by MAKER
MAKER Transcripts Spaln Alignment of Transcripts Predicted by MAKER
CDS Mapping BLASTX Mapping of Coding DNA Sequences
D. mel. TBLASTN Proteins Initial TBLASTN mapping of D. melanogaster proteins
Potential Frame Shifts Potential Frame Shifts Detected by SPALN2
-   RNA Seq Tracks    
modENCODE RNA-Seq Coverage modENCODE D. biarmipes RNA-Seq Coverage
modENCODE TopHat Junctions Junctions predicted by TopHat using modENCODE D. biarmipes RNA-Seq
modENCODE Cufflinks Transcripts modENCODE D. biarmipes Cufflinks Transcripts
-   Expression and Regulation    
Promoter Predictions Core Promoters predicted by EP3
Core Promoter Motifs Similarity to Drosophila Core Promoter Motifs Identified by Patser
-   Comparative Genomics    
Conservation 7 Drosophila Species Multiz Alignments & phastCons Scores
Most Conserved PhastCons Conserved Elements (7 Drosophila Species)
(dm3) D. mel. Chain D. melanogaster (Apr. 2006) Chained Alignments
(dm3) D. mel. Net D. melanogaster (Apr. 2006) Alignment Net
D. ere. Chain D. erecta (Feb. 2006 (CAF1)) Chained Alignments
D. ere. Net D. erecta (Feb. 2006 (CAF1)) Alignment Net
D. fic. Chain D. ficusphila (Mar. 2013 (WGS / Dfic_2.0)) Chained Alignments
D. fic. Net D. ficusphila (Mar. 2013 (WGS / Dfic_2.0)) Alignment Net
D. eug. Chain D. eugracilis (Mar. 2013 (WGS / Deug_2.0)) Chained Alignments
D. eug. Net D. eugracilis (Mar. 2013 (WGS / Deug_2.0)) Alignment Net
D. tak. Chain D. takahashii (Mar. 2013 (WGS / Dtak_2.0)) Chained Alignments
D. tak. Net D. takahashii (Mar. 2013 (WGS / Dtak_2.0)) Alignment Net
D. ana. Chain D. ananassae (Feb. 2006 (CAF1)) Chained Alignments
D. ana. Net D. ananassae (Feb. 2006 (CAF1)) Alignment Net
-   Variation and Repeats    
Repeat Density Repeat Density (1kb window, 0.5kb overlap)
RepeatMasker Repeating Elements by RepeatMasker
Simple Repeats Simple Tandem Repeats by TRF