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Configure Tracks on UCSC Genome Browser: D. ananassae Feb. 2006 (CAF1) (DanaWGS)
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-   Mapping and Sequencing Tracks    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
Fosmid Projects GEP Sequence Improvement Fosmid Projects
BLASR Alignments D. ananassae BLASR PacBio Alignments
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
BLASR Genome Coverage Coverage of BLASR Aligned PacBio Reads
BLASR Read Alignment Coverage Fraction of PacBio Read Aligned by BLASR
BLASR Read Unaligned Length Length of Unaligned Region of PacBio Read
-   Genes and Gene Prediction Tracks    
GLEAN-R Genes FlyBase GLEAN-R Gene Predictions
D. mel Proteins Spaln Alignment of D. melanogaster Proteins (FlyBase Release 5.53)
Potential Frame Shifts Potential Frame Shifts Detected by SPALN2
-   Comparative Genomics    
(dm3) D. mel. Chain D. melanogaster (Apr. 2006) Chained Alignments
(dm3) D. mel. Net D. melanogaster (Apr. 2006) Alignment Net
D. kik. v2 Chain D. kikkawai (Mar. 2013 (WGS / Dkik_2.0)) Chained Alignments
D. kik. v2 Net D. kikkawai (Mar. 2013 (WGS / Dkik_2.0)) Alignment Net
D. bip. v2 Chain D. bipectinata (Mar. 2013 (WGS / Dbip_2.0)) Chained Alignments
D. bip. v2 Net D. bipectinata (Mar. 2013 (WGS / Dbip_2.0)) Alignment Net
-   Variation and Repeats    
Wolbachia Contigs CENSOR Alignment of Contigs from Wolbachia Endosymbiont of D. ananassae
Wolbachia Proteins BLAT Alignment of Proteins from Wolbachia Endosymbiont of D. ananassae
RepeatMasker Repeating Elements by RepeatMasker
Simple Repeats Simple Tandem Repeats by TRF