Control track and group visibility more selectively below.
|
Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
Assembly |
| Assembly from Fragments |
Gap |
| Gap Locations |
GC Percent |
| GC Percent in 5-Base Windows |
Fosmid Projects |
| GEP Sequence Improvement Fosmid Projects |
BLASR Alignments |
| D. ananassae BLASR PacBio Alignments |
Restr Enzymes |
| Restriction Enzymes from REBASE |
Short Match |
| Perfect Matches to Short Sequence () |
BLASR Genome Coverage |
| Coverage of BLASR Aligned PacBio Reads |
BLASR Read Alignment Coverage |
| Fraction of PacBio Read Aligned by BLASR |
BLASR Read Unaligned Length |
| Length of Unaligned Region of PacBio Read |
|
|
GLEAN-R Genes |
| FlyBase GLEAN-R Gene Predictions |
D. mel Proteins |
| Spaln Alignment of D. melanogaster Proteins (FlyBase Release 5.53) |
Potential Frame Shifts |
| Potential Frame Shifts Detected by SPALN2 |
|
|
(dm3) D. mel. Chain |
| D. melanogaster (Apr. 2006) Chained Alignments |
(dm3) D. mel. Net |
| D. melanogaster (Apr. 2006) Alignment Net |
D. kik. v2 Chain |
| D. kikkawai (Mar. 2013 (WGS / Dkik_2.0)) Chained Alignments |
D. kik. v2 Net |
| D. kikkawai (Mar. 2013 (WGS / Dkik_2.0)) Alignment Net |
D. bip. v2 Chain |
| D. bipectinata (Mar. 2013 (WGS / Dbip_2.0)) Chained Alignments |
D. bip. v2 Net |
| D. bipectinata (Mar. 2013 (WGS / Dbip_2.0)) Alignment Net |
|
|
Wolbachia Contigs |
| CENSOR Alignment of Contigs from Wolbachia Endosymbiont of D. ananassae |
Wolbachia Proteins |
| BLAT Alignment of Proteins from Wolbachia Endosymbiont of D. ananassae |
RepeatMasker |
| Repeating Elements by RepeatMasker |
Simple Repeats |
| Simple Tandem Repeats by TRF |
|