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Computational Analysis: Demultiplexing Pipeline

Project Details
Elgin Lab

Run: HiSeq 2888_4

Analyzed: 01/19/2019
Seq data expires:
Analysis data expires:
Run notes:

1 Lane(s) single reads: 1 X 50 nts

Sample eug_chip1 eug_chip2 eug_input2 eug_input1 eug_chip4 eug_chip3
Index AATTCAT AGGCGAA CTGCAAT GTAAAAA TAACAAG TTTGGCG
Sample statistics:
Reads 58,249,033 (15.3%) 68,600,231 (18.0%) 79,532,454 (20.9%) 58,233,243 (15.3%) 44,678,054 (11.7%) 63,401,555 (16.7%)
Quality assurance:
Reads Passed Passed Passed Passed Passed Passed
Demux distribution graph

Deliverables:

If you have access to the HTCF cluster, the data is also located here: /scratch/gtac/GTAC_RUN_DATA/Elgin_2888_4

Raw sequence reads: Files generated by the Illumina sequencer for single reads. (15-25G each -fastq format)

run_2888_s_4_withindex_sequence.txt_AATTCAT.fq.gz
run_2888_s_4_withindex_sequence.txt_AGGCGAA.fq.gz
run_2888_s_4_withindex_sequence.txt_CTGCAAT.fq.gz
run_2888_s_4_withindex_sequence.txt_GTAAAAA.fq.gz
run_2888_s_4_withindex_sequence.txt_TAACAAG.fq.gz
run_2888_s_4_withindex_sequence.txt_TTTGGCG.fq.gz



Any publications resulting from the attached data should include the following acknowledgment: "This publication was made possible in part by Grant Number UL1 RR024992 from the NIH-National Center for Research Resources (NCRR)."