GEP 2012 Reaction Download Page

The sixth (final) round of the reaction results are now available for download.

These packages are tar gzip files. You can use tar on Unix machines, Stuff-It Expander on the Mac, or Winzip on Windows machines to uncompress the archive.

Once you have expanded the archive, you can copy the traces to the chromat_dir of your project directory. You can then rerun phrepPhrap or use the 'Add New Reads' function to add the reads to your assembly. For your convenience, a fof file has been included in each package.

To address some of the questions that were raised regarding incorporating the new reads, we have created two new screencasts demonstrating how to run phredPhrap and 'Add New Reads'. You can find the screencasts here.

If you encounter any additional problems, please let me know. Thanks

Wilson.

Sixth Round Reaction Packages

Reaction Packages for Dr. Revie

12round6_1492J04
12round6_1774P12
12round6_2402D22
12round6_2592P02
12round6_8061J24

Reaction Packages for Dr. Robic

12round6_1041G20

Reaction Packages for Dr. Stamm

12round6_2125O05

Reaction Packages for gepfaculty

12round6_1779G11
12round6_1784O04
12round6_2392K12
12round6_2401K14
12round6_2750B05
12round6_8061J24

Fifth Round Reaction Packages

Reaction Packages for Dr. Burg

12round5_2402D22

Reaction Packages for Dr. Haberman

12round5_1498I04
12round5_1771G21

Reaction Packages for Dr. Paetkau

12round5_1779L23
12round5_2125O05
12round5_2420E13

Reaction Packages for Dr. Revie

12round5_1492J04
12round5_1773C04
12round5_1774P12
12round5_2402D22

Reaction Packages for Dr. Stamm

12round5_2125O05
12round5_8061J24

Reaction Packages for gepfaculty

12round5_1782J04
12round5_2750B05

Fourth Round Reaction Packages

Reaction Packages for Dr. Burg

12round4_1141L04
12round4_1484G14
12round4_2394H15
12round4_2726J03

Reaction Packages for Dr. Paetkau

12round4_8065N09
12round4_8292A19

Reaction Packages for Dr. Revie

12round4_1492J04

Reaction Packages for Dr. Stamm

12round4_1141L04
12round4_8061J24

Reaction Packages for gepfaculty

12round4_1773C04
12round4_1779G11
12round4_1782J04
12round4_2726J03

Third Round Reaction Packages

Reaction Packages for Dr. Burg

12round3_1141L04
12round3_1484G14

Reaction Packages for Dr. Elgin

12round3_1484G14
12round3_1773K10
12round3_1782L02
12round3_2125O05
12round3_2422M21
12round3_2749L02
12round3_8050A06
12round3_8061O10

Reaction Packages for Dr. Haberman

12round3_1036P11
12round3_1039K11
12round3_1050L17
12round3_1132C09
12round3_1132L20
12round3_1147E06
12round3_1475K17
12round3_1490H23
12round3_1498I04
12round3_1771G21
12round3_2387H03
12round3_2392P10
12round3_2394H15
12round3_2728H07

Reaction Packages for Dr. Paetkau

12round3_1049B07
12round3_1779L23
12round3_8054E24
12round3_8057G12
12round3_8286P17

Reaction Packages for Dr. Revie

12round3_1774P08
12round3_1774P12
12round3_2391D16
12round3_2402D22
12round3_2592P02
12round3_8061J24

Reaction Packages for Dr. Stamm

12round3_1141L04
12round3_2594O08
12round3_8055O14
12round3_8061J24
12round3_8295B09

Second Round Reaction Packages

Reaction Packages for Dr. Burg

12round2_1141L04
12round2_2392P10
12round2_2726J03
12round2_8055O14

Reaction Packages for Dr. Elgin

12round2_1131J07
12round2_2125O05
12round2_2402D22
12round2_2592H16
12round2_2595J18
12round2_2728G16
12round2_2749L02

Reaction Packages for Dr. Paetkau

12round2_2401K14
12round2_2408G05
12round2_2594O08
12round2_2742C10
12round2_2748I18
12round2_8065K08
12round2_8065N09
12round2_8286P17
12round2_8292N12
12round2_8295B09

Reaction Packages for Dr. Skuse

12round2_8055O14

Reaction Packages for Dr. Stamm

12round2_1141L04
12round2_2125O05
12round2_2391D16
12round2_8055O14

First Round Reaction Packages

Reaction Packages for Dr. Burg

12round1_1036A03
12round1_1141L04
12round1_1475K17
12round1_1773C04
12round1_8055O14

Reaction Packages for Dr. Elgin

12round1_1131J07
12round1_1484G14
12round1_1773P16
12round1_2125O05
12round1_2391D16
12round1_2402D22
12round1_2592H16
12round1_2595C06
12round1_2595J18
12round1_2595J23
12round1_2728G16
12round1_2749L02
12round1_8050A06
12round1_8061O10
12round1_8299I10

Reaction Packages for Dr. Revie

12round1_1492J04
12round1_1773C04
12round1_1774P08
12round1_1774P12
12round1_2402D22
12round1_8061J24
12round1_8296L20

Reaction Packages for Dr. Stamm

12round1_1141L04
12round1_2125O05
12round1_2391D16
12round1_2404I15
12round1_2595C06
12round1_8055O14

Reaction Packages for gepfaculty

12round1_1105A09
12round1_1479A08

Additional traces from the NCBI Trace Archive

Additional fosmid end traces

1029P06 1036A03 1036P11 1039K11 1041G20 1049B07 1050L17 1105A09 1131J07 1132C09
1132L20 1141L04 1145J01 1147E06 1475K17 1479A08 1484G14 1490H23 1492J04 1498I04
1770P16 1771G21 1773C04 1773K10 1773P16 1774P08 1774P12 1779G11 1779L23 1782J04
1782L02 1784N11 1784O04 2125O05 2387H03 2391D16 2392K12 2392P10 2394H15 2401K14
2402D22 2404I15 2408G05 2410F24 2420E13 2422M21 2592H16 2592P02 2594O08 2595C06
2595J18 2595J23 2602K20 2726H13 2726J03 2728G16 2728H07 2742C10 2743M09 2748I18
2749L02 2750B05 8050A06 8050A22 8054E24 8055O14 8057G12 8061J24 8061O10 8065K08
8065N09 8068P07 8283H01 8286P17 8292A19 8292N12 8295B09 8296L20 8299I10