Schema for Assembly - Assembly from Fragments
  Database: DereCAF1    Primary Table: gold    Row Count: 7,610   Data last updated: 2022-10-20
fieldexampleSQL type info
bin 585smallint(6) range
chrom scaffold_0varchar(255) values
chromStart 0int(10) unsigned range
chromEnd 2805int(10) unsigned range
ix 3306int(11) range
type Dchar(1) values
frag scaffold_0_1varchar(255) values
fragStart 0int(10) unsigned range
fragEnd 2805int(10) unsigned range
strand +char(1) values

Sample Rows
 
binchromchromStartchromEndixtypefragfragStartfragEndstrand
585scaffold_0028053306Dscaffold_0_102805+
585scaffold_1014682052Dscaffold_1_101468+
585scaffold_10024083109Dscaffold_10_102408+
585scaffold_10007823286Dscaffold_100_10782+
585scaffold_100176527733288Dscaffold_100_201008+
585scaffold_100001075667Dscaffold_1000_101075+
585scaffold_10010896237Dscaffold_1001_10896+
585scaffold_1002013111568Dscaffold_1002_101311+
585scaffold_10030867205Dscaffold_1003_10867+
585scaffold_1004012761451Dscaffold_1004_101276+

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Assembly (gold) Track Description
 

Description

This track shows the draft assembly of the D. erecta genome. Whole-genome shotgun reads were assembled into contigs and when possible, contigs were grouped into scaffolds (also known as "supercontigs"). The order, orientation and gap sizes between contigs within a scaffold are based on paired-end read evidence.

In dense mode, this track depicts the contigs that make up the currently-viewed scaffold. Contig boundaries are distinguished by the use of alternating gold and brown coloration. Where gaps exist between contigs, spaces are shown between the gold and brown blocks. The relative order and orientation of the contigs within a scaffold is always known; therefore, a line is drawn in the graphical display to bridge the blocks.

All components within this track are of fragment type "W" (Whole Genome Shotgun contig).