Schema for Melting Temp. - Melting Temperature Estimated by dan
  Database: DmojImproved    Primary Table: melting_temp    Row Count: 1
fieldexampleSQL type info
fileName /gbdb/DmojImproved/bbi/Dmoj...varchar(255) values

This table points to a file in BigWig format.

Sample Rows
 
fileName
/gbdb/DmojImproved/bbi/DmojImproved_melting_temp.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Melting Temp. (melting_temp) Track Description
 

Description

This track shows the melting temperature as determined by the dan tool in the EMBOSS package using a sliding window of 9bp (windowsize=9) and a step size of 1 (shiftincrement=1) with the following parameters: dnaconc=50, saltconc=50, mintemp=55.

References

Rice, P. Longden, I. and Bleasby, A. EMBOSS: The European Molecular Biology Open Software Suite. (2000) Trends in Genetics 16, (6) pp276--277